Hmm realy? as that is odd..
Is the case set up for it? what about the power supply?
If you got more fans in the back you should run it the other way, particularly if you got a video card and/or power supply venting out the back, otherwise its just going to suck the expelled hot air from those 2 things back in the case.
Usually the cooler air is found in the front of the machine due to how we tend to keep the back close to walls or corners, and how most computer desks are designed.
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