Speaking very generally, yes, you'll notice a drop-off in overall traffic as the Japanese simply didn't have all that many ships. Quite a number of areas in the Pacific were simply backwaters during the war - some of the islands would get a single ship every other week for resupply, and that's it. Central Pacific and the Aleutians can be a real test of patience, because aside from the few major naval operations at the outset, they are effectively dead.
On the other hand, traffic goes where it ought to be, and you'll find ships if you want to. RSRDC does a great job providing intel reports by radio - LISTEN TO THEM! They will lead you to good hunting grounds. Want to find invasion forces or task groups from major naval strikes? Look up where they were historically, and they will be there. Unique operations such as the Tokyo Express in the Solomons? Also there.
And if all else fails - South China Sea and East China Sea will provide you with convoys throughout the war. The Bismarck Sea is also a reliable convoy hunting ground in 1942 through early 1943.
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