I'll just do a re-install. This was a crazy problem..

A PITA I know but probably the best way forward.

Don't forget to perform a registry clean.

Thanks for the help everyone :).

Edit: Wait, the only one that doesn't actually work in the SHC options is the start at sea option. Every other option works fine. Out of curiousity... could it be the file inside of Commander screwing up?

Try removing and installing SHC again?

I'm just being fanciful about the idea of finding the file inside of commander and fixing it. If that would work, that would be pretty nice :)