The Winds of War and War and Rememberance TV mini-series (both books are worth reading too.)
http://www.imdb.com/title/tt0085112/
http://www.imdb.com/title/tt0096725/
Not necessarily a dedicated WW2 naval drama, the story revolves around Navy Commander Victor "Pug" Henry (Robert Mitchum), and his son Byron Henry (a sub commander) during WW2 and takes on a far bigger scope.
The first series begins before WW2 and leads up to the attack on Pearl Harbor, then continues in the second series.