Didn't read all the post, so not sure, but sometimes water gets twitchy, graphic issues and laggy, you can usually just reset the weather to clear it out, rather than go to port. Just don't do it in a storm surrounded by the enemy as it clears the weather and you'll get shot to pieces if you're on the surface.
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You see my dog don't like people laughing. He gets the crazy idea you're laughing at him. Now if you apologize like I know you're going to, I might convince him that you really didn't mean it.
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