This happened to me once
I got a new boat and was transferred to the Asiatic fleet. I started from Brisbane. The "big anchor" was in Brisbane during my patrol. When I came back, I could not end my patrol. My "big anchor" had suddenly shifted to Fremantle.
Thinking I was crazy, I reloaded from a save. I repeated, and the same thing happened. So I motored on over to Fremantle and ended my patrol.
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