Have you thought about creating a wiki for all the ship systems? as the game grows and more systems get added it will make it easier for people to learn the exact mechanics of each system for instance the way bilge pumps don't work after a certain depth etc.
Your adding some really well thought out systems with complicated mechanics but they are kind of transparent unless the player is paying close attention to each system. Having the details of each system documented would make modding support easier if you decide to add it and help the learning curve for new starters if the game grows more complex. Players could also add a lot of content around tutorials or strategies.
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