Welcome Kng.
I'm in almost the exact same boat as you, so I don't have all the answers, however I have my SH3 installed with GWX gold, and have installed Magui F in conjunction with this and it works well.
Unfortunately, that is the only answer I can provide with any certainty.
I have found that JSGME allows you to remove and add mods quickly, so my advice is to simply add the mods you want one at a time and run a couple tutorial missions to see that everything still works.
You can always remove the mod that creates any conflict.
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